Basic Information
Locus ID:
BniB07g019200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 32080911 | 32084976 | - | BniB07g019200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 79,669.94 Da | 44.11 | 85.49 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 75 | 283 | 1.92865E-135 | - |
| CDD | cd18794 | SF2_C_RecQ | 284 | 420 | 2.23483E-72 | - |
| Pfam | PF16124 | RecQ zinc-binding | 423 | 479 | 2.3E-12 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 603 | 663 | 1.6E-7 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 95 | 263 | 1.1E-18 | IPR011545 |
| Pfam | PF09382 | RQC domain | 485 | 587 | 2.5E-5 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 410 | 1.7E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 131 | 427 | 6.97E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 58 | 283 | 2.5E-88 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 599 | 667 | 1.1E-10 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 484 | 584 | 4.9E-25 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 284 | 480 | 4.8E-65 | IPR027417 |
| SMART | SM00490 | helicmild6 | 330 | 411 | 9.6E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 89 | 292 | 1.7E-28 | IPR014001 |
| SMART | SM00956 | RQC_2 | 488 | 585 | 4.7E-4 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 86 | 511 | 1.6E-161 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 301 | 453 | 19.596333 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 595 | 674 | 12.388391 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 101 | 276 | 23.109034 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 600 | - | - |
| Coils | Coil | Coil | 706 | 709 | - | - |
| Coils | Coil | Coil | 516 | 536 | - | - |
| Coils | Coil | Coil | 3 | 30 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_013693262.2 | ATP-dependent DNA helicase Q-like 2 [Brassica napus] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VPI9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018156 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology