Basic Information
Locus ID:
BniB07g019180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 32074209 | 32076346 | + | BniB07g019180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 48,759.96 Da | 49.65 | 78.02 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 372 | 420 | 1.0E-11 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 43 | 254 | 2.09E-25 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 368 | 426 | 5.25E-16 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 350 | 434 | 6.8E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 258 | 4.2E-10 | IPR027267 |
| SMART | SM00326 | SH3_2 | 368 | 423 | 5.4E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 365 | 424 | 20.204279 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 358 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 145 | 179 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_018447603.1 | PREDICTED: SH3 domain-containing protein 1-like [Raphanus sativus] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VPX4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_018154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology