halophFGD

Basic Information

Locus ID: BniB07g016120.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Belongs to the GST superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B7	26929019	26930691	-	BniB07g016120.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.66	39,319.67 Da	39.09	95.23	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	52	236	2.88E-6	-
MobiDBLite	mobidb-lite	consensus disorder prediction	304	325	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	304	329	-	-

KEGG Pathway

KO Term:

K01872 (alanyl-tRNA synthetase [EC:6.1.1.7])

Pathway:

ko00970 (Aminoacyl-tRNA biosynthesis) map00970 (Aminoacyl-tRNA biosynthesis)

Reaction:

R03038 (ATP + L-Alanine + tRNA(Ala) <=> AMP + Diphosphate + L-Alanyl-tRNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67390.1	F-box family protein.
RefSeq	XP_013601723.1	PREDICTED: F-box protein At3g60790-like [Brassica oleracea var. oleracea]
Swiss-Prot	Q9FYF4	Putative F-box protein At1g67390 OS=Arabidopsis thaliana OX=3702 GN=At1g67390 PE=4 SV=1
TrEMBL	A0A8X7VAD4	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026879 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	6	AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... AT3G60790.1, AT5G35945.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... Thhalv10009850m.g.v1.0, Thhalv10019621m.g.v1.0, Thhalv10022453m.g.v1.0, Thhalv10022454m.g.v1.0, Thhalv10026859m.g.v1.0, Thhalv10026887m.g.v1.0, Thhalv10026901m.g.v1.0, Thhalv10027156m.g.v1.0, Thhalv10027212m.g.v1.0, Thhalv10027314m.g.v1.0, Thhalv10027373m.g.v1.0, Thhalv10027448m.g.v1.0, Thhalv10027541m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... Sp5g02460.v2.2, Sp5g33570.v2.2, Sp7g13290.v2.2
Brassicaceae	Brassica nigra	25	BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... BniB03g057970.2N, BniB03g057980.2N, BniB03g058040.2N, BniB03g058050.2N, BniB03g058070.2N, BniB03g060250.2N, BniB04g048250.2N, BniB04g050140.2N, BniB04g054130.2N, BniB05g062410.2N, BniB05g074460.2N, BniB06g043570.2N, BniB06g046000.2N, BniB06g051180.2N, BniB06g062370.2N, BniB07g016100.2N, BniB07g016120.2N, BniB08g052270.2N, BniB08g075070.2N, BniB08g075090.2N, BniB08g075100.2N, BniS00612g170.2N
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g28740
Tamaricaceae	Reaumuria soongarica	1	STRG.3233_chr01_+