Basic Information
Locus ID:
BniB07g012780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 17120765 | 17121546 | + | BniB07g012780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 21,700.24 Da | 34.97 | 83.60 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 161 | 185 | 2.9E-8 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 187 | 7.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 188 | 4.9E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 185 | 10.217316 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048613374.1 | uncharacterized protein LOC125587211 [Brassica napus] | 0 |
| TrEMBL | A0A8S9HF16 | RING-type domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00015171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002215m.g.v1.0 |
| Brassicaceae | Brassica nigra | 24 | BniB01g016270.2N, BniB01g039860.2N, BniB01g039880.2N ... |