Basic Information
Locus ID:
BniB07g008110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 7232279 | 7256361 | + | BniB07g008110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 460,667.97 Da | 45.59 | 86.27 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2645 | 2751 | 1.03442E-6 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.1E-31 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2001 | 2168 | 1.5E-10 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 805 | 1.8E-36 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2252 | 2393 | 1.0E-8 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3144 | 3448 | 3.9E-13 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 382 | 6.6E-71 | IPR031646 |
| SUPERFAMILY | SSF50729 | PH domain-like | 847 | 944 | 8.67E-5 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2625 | 2752 | 1.8E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2626 | 2784 | 2.0E-7 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2622 | 2765 | 9.541082 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2210 | 2234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3517 | 3536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4102 | 4139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3520 | 3536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4110 | 4139 | - | - |
| Coils | Coil | Coil | 107 | 127 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_018450491.1 | PREDICTED: uncharacterized protein LOC108821980 isoform X2 [Raphanus sativus] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VNE2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology