Basic Information
Locus ID:
BniB07g007020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
AMSH-like ubiquitin thioesterase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 6067454 | 6070390 | + | BniB07g007020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 56,836.75 Da | 62.38 | 82.21 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 328 | 503 | 2.07081E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 5 | 104 | 6.4E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 326 | 432 | 2.4E-17 | IPR000555 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 112 | 6.41E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 328 | 459 | 4.18E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 118 | 1.2E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 314 | 503 | 1.8E-68 | - |
| SMART | SM00232 | pad1_6 | 328 | 456 | 6.7E-15 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 329 | 459 | 30.459904 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 255 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_013719987.2 | AMSH-like ubiquitin thioesterase 1 [Brassica napus] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8AY93 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017384 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology