Basic Information
Locus ID:
BniB07g004620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 3974896 | 3977103 | + | BniB07g004620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 45,396.65 Da | 34.71 | 91.16 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 247 | 377 | 1.01554E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 9.5E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 2.9E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 390 | 1.31E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 404 | 4.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 24 | 241 | 3.2E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 9.7E-53 | IPR014001 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 2.8E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.497022 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 404 | 24.964127 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 24.850643 | IPR014001 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51380.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_009107205.1 | DEAD-box ATP-dependent RNA helicase 34 [Brassica rapa] | 0 |
| Q9C8J1 | DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana OX=3702 GN=RH34 PE=2 SV=2 | 0 | |
| TrEMBL | A0A397Y762 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA08T32335Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology