Basic Information
Locus ID:
BniB07g004410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 3764657 | 3764984 | + | BniB07g004410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 8,964.95 Da | 35.37 | 60.78 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 3 | 60 | 5.6E-8 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 60 | 3.56E-12 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 77 | 2.8E-15 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 77 | 9.658483 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_022568663.2 | receptor-like kinase TMK2 [Brassica napus] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VNM0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017207 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah035048 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003140 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29654.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19770.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043510.2N, BniB06g049840.2N, BniB07g004410.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq07G0586, Ceq07G0670, Ceq07G0689 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0667, Cgl07G0681 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300088 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44088 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12693 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19761 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.734 |