Basic Information
Locus ID:
BniB07g004100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 3474864 | 3478181 | - | BniB07g004100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 56,210.29 Da | 46.68 | 74.76 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 253 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 54 | 494 | 2.75E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 322 | 1.7E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 49 | 184 | 5.3E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 326 | 500 | 2.1E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 323 | 361 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 304 | 9.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 159 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 81 | 1.9 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 27 | 502 | 6.9E-189 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 223 | 237 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 392 | 418 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 253 | 280 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 338 | 365 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 135 | 163 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 106 | 134 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 281 | 309 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 60 | 80 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 310 | 337 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 366 | 391 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 471 | 500 | 1.2E-152 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 225 | 252 | 1.2E-152 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51690.2 | protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA, | 0 |
| RefSeq | XP_006393009.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X6 [Eutrema salsugineum] | 0 |
| Q38821 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VLQ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology