Basic Information
Locus ID:
BniB07g002510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 2278661 | 2279776 | + | BniB07g002510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 42,632.05 Da | 52.36 | 79.52 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 44 | 5.9E-7 | IPR001810 |
| Pfam | PF07734 | F-box associated | 194 | 366 | 2.6E-41 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 97 | 317 | 2.75E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 129 | 2.22E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 2.4E-6 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 2.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 95 | 321 | 3.1E-44 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 11.219605 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17540.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018466377.1 | PREDICTED: putative F-box/kelch-repeat protein At3g17540 [Raphanus sativus] | 0 |
| Q9LUP4 | Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana OX=3702 GN=At3g17540 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8AXX1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017084 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |