Basic Information
Locus ID:
BniB07g002220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 2074804 | 2078383 | - | BniB07g002220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 77,403.64 Da | 40.67 | 89.27 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 95 | 111 | 0.12 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 414 | 683 | 6.3E-37 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 70 | 4.9E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 177 | 2.3E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 233 | 2.62E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 684 | 5.19E-67 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 251 | 3.0E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 491 | 704 | 2.4E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 375 | 489 | 1.6E-24 | - |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 5.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 211 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 188 | 7.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 100.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 686 | 34.223373 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 418 | 441 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 281 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_009106960.1 | protein STRUBBELIG-RECEPTOR FAMILY 6 [Brassica rapa] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VMH1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology