Basic Information
Locus ID:
BniB07g001800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 1766601 | 1769030 | + | BniB07g001800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 45,786.85 Da | 47.78 | 63.89 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 264 | 339 | 5.93494E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 1.25625E-50 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 1.76614E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 4.4E-20 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 1.1E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 266 | 323 | 5.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 348 | 3.36E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 55 | 220 | 3.28E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 221 | 2.4E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 344 | 1.2E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 8.1E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 8.5E-26 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 265 | 335 | 5.4E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 2.8E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 264 | 339 | 15.152756 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 14.572872 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 18.376226 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54080.1 | oligouridylate-binding protein 1A. | 0 |
| RefSeq | XP_009106944.1 | oligouridylate-binding protein 1A isoform X3 [Brassica rapa] | 0 |
| Q9SYG4 | Oligouridylate-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=UBP1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VLH2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_017030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology