Basic Information
Locus ID:
BniB07g000720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 973202 | 976130 | + | BniB07g000720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 49,064.24 Da | 34.20 | 120.00 | 0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 298 | 437 | 2.6E-19 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 115 | 270 | 9.8E-22 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 144 | 441 | 2.2E-30 | IPR044880 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 80 | 440 | 7.4E-119 | - |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 96 | 440 | 6.6E-100 | IPR004798 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55730.1 | cation exchanger 5. member of Low affinity calcium antiporter CAX2 family | 0 |
| RefSeq | XP_009106833.1 | vacuolar cation/proton exchanger 5-like isoform X1 [Brassica rapa] | 0 |
| Q8L783 | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana OX=3702 GN=CAX5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VM53 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology