Basic Information
Locus ID:
BniB06g068160.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 60596837 | 60600833 | - | BniB06g068160.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 96,567.85 Da | 55.93 | 70.71 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 556 | 596 | 4.21E-5 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 69 | 258 | 6.24E-8 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 660 | 701 | 1.58E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 555 | 605 | 5.7E-9 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 652 | 708 | 8.8E-10 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 51 | 295 | 7.0E-6 | IPR011989 |
| SMART | SM00333 | TUDOR_7 | 658 | 716 | 1.1 | IPR002999 |
| SMART | SM00333 | TUDOR_7 | 554 | 612 | 2.0 | IPR002999 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 803 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 657 | - | - |
| Coils | Coil | Coil | 803 | 823 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_018457650.1 | PREDICTED: transcriptional regulator ATRX isoform X5 [Raphanus sativus] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A6J0LBV4 | transcriptional regulator ATRX isoform X5 OS=Raphanus sativus OX=3726 GN=LOC108828446 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology