Basic Information
Locus ID:
BniB06g067380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains UspA (InterPro IPR006016), Serine threonine-protein kinase domain (InterPro IPR002290), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine-protein kinase, active site (InterPro IPR008271), Protein kinase-like domain (InterPro IPR011009), Rossmann-like alpha beta alpha sandwich fold (InterPro IPR014729), Protein kinase, catalytic domain (InterPro IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro IPR020635)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 60180623 | 60184025 | - | BniB06g067380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 83,637.07 Da | 54.16 | 75.92 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 18 | 154 | 5.57245E-56 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 447 | 698 | 9.1E-39 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 19 | 143 | 2.8E-9 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 19 | 151 | 2.18E-10 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 423 | 698 | 3.14E-65 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 517 | 722 | 5.7E-47 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 153 | 1.0E-10 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 413 | 516 | 3.3E-25 | - |
| SMART | SM00220 | serkin_6 | 444 | 706 | 3.4E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 444 | 706 | 34.972477 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 562 | 574 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 317 | - | - |
| Coils | Coil | Coil | 377 | 406 | - | - |
| Coils | Coil | Coil | 352 | 372 | - | - |
| Coils | Coil | Coil | 317 | 337 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_018453409.1 | PREDICTED: U-box domain-containing protein 52 [Raphanus sativus] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WAB4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008659 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology