Basic Information
Locus ID:
BniB06g066830.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK13
Description:
ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 59808571 | 59811790 | - | BniB06g066830.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 59,641.42 Da | 43.22 | 83.48 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 432 | 494 | 2.18902E-18 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 54 | 312 | 3.69748E-134 | - |
| Pfam | PF13499 | EF-hand domain pair | 359 | 419 | 6.0E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 431 | 494 | 1.3E-13 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 55 | 313 | 1.7E-74 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 337 | 506 | 1.78E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 53 | 321 | 1.48E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 43 | 136 | 1.0E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 322 | 497 | 2.2E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 137 | 321 | 5.6E-61 | - |
| SMART | SM00054 | efh_1 | 360 | 388 | 1.3E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 396 | 424 | 5.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 432 | 460 | 2.1E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 55 | 313 | 4.4E-95 | IPR000719 |
| SMART | SM00054 | efh_1 | 468 | 496 | 1.5E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 428 | 463 | 15.294476 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 356 | 391 | 15.601326 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 313 | 46.943974 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 464 | 499 | 14.06708 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 61 | 84 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 369 | 381 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 477 | 489 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 34 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_013637143.1 | PREDICTED: calcium-dependent protein kinase 13 [Brassica oleracea var. oleracea] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B9D7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology