Basic Information
Locus ID:
BniB06g066780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 59792489 | 59793537 | + | BniB06g066780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 23,434.39 Da | 50.45 | 67.12 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 139 | 200 | 1.85292E-17 | IPR002048 |
| CDD | cd00051 | EFh | 66 | 128 | 1.17531E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 66 | 127 | 1.0E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 139 | 200 | 8.8E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 52 | 201 | 8.88E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 156 | 205 | 2.4E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 47 | 155 | 2.9E-32 | - |
| SMART | SM00054 | efh_1 | 102 | 130 | 0.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 139 | 167 | 1.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 175 | 203 | 0.004 | IPR002048 |
| SMART | SM00054 | efh_1 | 66 | 94 | 0.004 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 171 | 205 | 10.356991 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 133 | 10.412781 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 135 | 170 | 15.517639 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 62 | 97 | 13.927603 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 184 | 196 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 148 | 160 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04015 (Rap1 signaling pathway)
map04015 (Rap1 signaling pathway)
ko04016 (MAPK signaling pathway - plant)
map04016 (MAPK signaling pathway - plant)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04070 (Phosphatidylinositol signaling system)
map04070 (Phosphatidylinositol signaling system)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
ko04745 (Phototransduction - fly)
map04745 (Phototransduction - fly)
ko04750 (Inflammatory mediator regulation of TRP channels)
map04750 (Inflammatory mediator regulation of TRP channels)
ko04916 (Melanogenesis)
map04916 (Melanogenesis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51920.1 | calmodulin 9. encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid. | 0 |
| RefSeq | XP_018478090.1 | PREDICTED: calmodulin-like protein 9 [Raphanus sativus] | 0 |
| Q9S744 | Calmodulin-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=CML9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B927 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology