Basic Information
Locus ID:
BniB06g063000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 57776789 | 57778771 | - | BniB06g063000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 74,553.25 Da | 37.65 | 93.05 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 13 | 246 | 1.87218E-81 | IPR001220 |
| CDD | cd14066 | STKc_IRAK | 342 | 612 | 3.37359E-87 | - |
| Pfam | PF00069 | Protein kinase domain | 336 | 547 | 1.4E-49 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 26 | 248 | 1.1E-56 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 11 | 270 | 2.8E-60 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 317 | 620 | 1.35E-77 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 9 | 251 | 2.7E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 321 | 412 | 9.0E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 626 | 1.5E-55 | - |
| SMART | SM00220 | serkin_6 | 336 | 603 | 5.2E-38 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 336 | 597 | 39.424686 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 342 | 365 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 460 | 472 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59700.1 | lectin-receptor kinase. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_018461570.1 | PREDICTED: L-type lectin-domain containing receptor kinase V.5-like [Raphanus sativus] | 0 |
| Q96285 | L-type lectin-domain containing receptor kinase V.5 OS=Arabidopsis thaliana OX=3702 GN=LECRK55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0LMT4 | L-type lectin-domain containing receptor kinase V.5-like OS=Raphanus sativus OX=3726 GN=LOC108832600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G59700.1, AT3G59730.1, AT3G59740.1, AT3G59750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005823m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g03460.v2.2, Sp5g03480.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064220.2N, BniB06g053940.2N, BniB06g062990.2N ... |