Basic Information
Locus ID:
BniB06g062230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
NTMC2T4.1
Description:
Contains the following InterPro domains C2 membrane targeting protein (InterPro IPR018029), C2 calcium lipid-binding domain, CaLB (InterPro IPR008973)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 57406263 | 57409135 | - | BniB06g062230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 54,608.98 Da | 30.76 | 100.71 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 364 | 3.25902E-29 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 2.0E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 359 | 1.4E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 263 | 394 | 1.25E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 417 | 5.2E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 1.6E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.619179 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 21.315701 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 505 | - | - |
| Coils | Coil | Coil | 390 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_009138799.1 | synaptotagmin-4 [Brassica rapa] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7UTI3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_047670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology