Basic Information
Locus ID:
BniB06g061440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 57017282 | 57019123 | + | BniB06g061440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 45,160.66 Da | 48.17 | 80.98 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 277 | 302 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 307 | 8.25E-31 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 277 | 400 | 1.92E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 58 | 381 | 5.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 137 | 172 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 303 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 259 | 0.072 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_018485329.1 | PREDICTED: autophagy-related protein 18a-like [Raphanus sativus] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W8C6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology