Basic Information
Locus ID:
BniB06g061310.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56974612 | 56976982 | + | BniB06g061310.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 66,803.65 Da | 49.08 | 92.52 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 8 | 47 | 1.2E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 66 | 112 | 5.1E-26 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 32 | 534 | 1.9E-37 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 42 | 4.71E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 576 | 2.2E-190 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 4.1E-23 | - |
| SMART | SM00367 | LRR_CC_2 | 431 | 454 | 200.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 5.2E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 480 | 504 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 395 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 183 | 209 | 98.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 313 | 336 | 470.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_018484009.1 | PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Raphanus sativus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7WA72 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008083 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology