Basic Information
Locus ID:
BniB06g061110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
ATMRK1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56887202 | 56891410 | + | BniB06g061110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 79,681.71 Da | 32.68 | 81.52 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 86 | 356 | 1.07183E-106 | - |
| Pfam | PF02574 | Homocysteine S-methyltransferase | 410 | 715 | 2.9E-77 | IPR003726 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 81 | 356 | 5.0E-62 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 56 | 356 | 2.87E-77 | IPR011009 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 405 | 719 | 1.44E-83 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 396 | 716 | 4.9E-102 | IPR036589 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 157 | 1.7E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 183 | 365 | 7.7E-61 | - |
| SMART | SM00220 | serkin_6 | 80 | 359 | 1.4E-61 | IPR000719 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 397 | 716 | 48.736897 | IPR003726 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 80 | 359 | 40.767414 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 223 | 235 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 283 | 305 | 1.1E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 179 | 192 | 1.1E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 217 | 235 | 1.1E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 327 | 349 | 1.1E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63260.1 | Protein kinase superfamily protein. protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase | 0 |
| RefSeq | XP_013692666.1 | serine/threonine-protein kinase STY13 [Brassica napus] | 0 |
| Q4VNK0 | Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica OX=36774 GN=SMT PE=1 SV=1 | 0 | |
| TrEMBL | A0A816JN21 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C04P29960.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology