Basic Information
Locus ID:
BniB06g061090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56879128 | 56883562 | - | BniB06g061090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 106,914.32 Da | 60.00 | 78.42 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08215 | STKc_Nek | 3 | 258 | 3.02215E-130 | - |
| Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 768 | 853 | 4.0E-6 | IPR044861 |
| Pfam | PF00069 | Protein kinase domain | 4 | 257 | 1.2E-64 | IPR000719 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 556 | 934 | 1.58E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 307 | 5.74E-83 | IPR011009 |
| Gene3D | G3DSA:2.60.120.330 | - | 572 | 889 | 2.5E-26 | IPR027443 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 86 | 317 | 2.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 83 | 3.6E-22 | - |
| SMART | SM00220 | serkin_6 | 4 | 258 | 9.5E-82 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 258 | 46.590622 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 125 | 137 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 294 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63280.1 | NIMA-related kinase 4. Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | 0 |
| RefSeq | XP_018459651.1 | PREDICTED: serine/threonine-protein kinase Nek4 isoform X1 [Raphanus sativus] | 0 |
| Q8RXT4 | Serine/threonine-protein kinase Nek4 OS=Arabidopsis thaliana OX=3702 GN=NEK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816JX20 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C04P29940.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology