Basic Information
Locus ID:
BniB06g060440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56531044 | 56533595 | - | BniB06g060440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 40,884.47 Da | 49.25 | 80.73 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 148 | 197 | 1.08833E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 4.01125E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 259 | 314 | 8.3E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 154 | 192 | 1.6E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 2.4E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 339 | 374 | 1.3E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 151 | 202 | 4.84E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 321 | 381 | 9.0E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 255 | 320 | 6.67E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 8.75E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 331 | 378 | 1.2E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 248 | 315 | 2.9E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 7.9E-27 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 147 | 198 | 1.4E-22 | - |
| SMART | SM00727 | CBM | 257 | 300 | 9.8E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 154 | 194 | 3.9E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 339 | 376 | 5.1E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 74 | 6.0E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 1.6E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 152 | 195 | 12.546894 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 336 | 377 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 75 | 19.803936 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 364 | 5.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 349 | 5.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 285 | 307 | 5.9E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 365 | 380 | 5.9E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 122 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013588046.1 | PREDICTED: ubiquitin receptor RAD23d [Brassica oleracea var. oleracea] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A078J5P5 | Ubiquitin receptor RAD23 OS=Brassica napus OX=3708 GN=BnaCnng32650D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology