Basic Information
Locus ID:
BniB06g059820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56192872 | 56193945 | - | BniB06g059820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 40,051.26 Da | 61.17 | 79.97 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 130 | 173 | 4.7512E-19 | - |
| Pfam | PF13639 | Ring finger domain | 130 | 173 | 6.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 179 | 1.11E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 178 | 1.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 131 | 172 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 173 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 308 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013698895.2 | RING-H2 finger protein ATL46-like [Brassica napus] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B8D7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology