Basic Information
Locus ID:
BniB06g059790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 56185910 | 56188549 | + | BniB06g059790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 98,679.83 Da | 52.52 | 60.98 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 92 | 178 | 9.67704E-29 | - |
| Pfam | PF00855 | PWWP domain | 92 | 179 | 6.5E-19 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 85 | 187 | 3.31E-28 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 80 | 189 | 9.4E-27 | - |
| SMART | SM00293 | PWWP_4 | 92 | 153 | 1.7E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 94 | 155 | 14.937233 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 345 | - | - |
| Coils | Coil | Coil | 646 | 692 | - | - |
| Coils | Coil | Coil | 67 | 87 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_013591743.1 | PREDICTED: uncharacterized protein LOC106300194 [Brassica oleracea var. oleracea] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W830 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology