Basic Information
Locus ID:
BniB06g058720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycine hydroxymethyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 55611040 | 55611683 | + | BniB06g058720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 8,872.80 Da | 38.35 | 72.35 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00460 (Cyanoamino acid metabolism)
map00460 (Cyanoamino acid metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko00670 (One carbon pool by folate)
map00670 (One carbon pool by folate)
ko00680 (Methane metabolism)
map00680 (Methane metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
ko01523 (Antifolate resistance)
map01523 (Antifolate resistance)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | A0A8X7RG99 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_046881 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000000970 |
| Apiaceae | Apium graveolens | 1 | Ag6G02827 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020030 |
| Brassicaceae | Brassica nigra | 5 | BniB01g013650.2N, BniB04g036870.2N, BniB06g058710.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0209 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12324, nbisL1-mrna-12360, nbisL1-mrna-1654 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16609 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106080 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002798 |