Basic Information
Locus ID:
BniB06g057930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 55174441 | 55175559 | + | BniB06g057930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 34,170.01 Da | 39.99 | 70.32 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 250 | 290 | 1.48014E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 249 | 295 | 1.5E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 296 | 1.56E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 300 | 4.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 251 | 289 | 5.3E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 222 | 301 | 4.0E-10 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 10 | 81 | 160.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 290 | 10.792683 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013647923.2 | probable E3 ubiquitin-protein ligase LUL2 [Brassica napus] | 0 |
| Q9LFH6 | Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W8K6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007789 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology