Basic Information
Locus ID:
BniB06g054980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MATH domain and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 53624848 | 53626676 | + | BniB06g054980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 45,687.72 Da | 38.88 | 84.19 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 8 | 130 | 9.06605E-27 | IPR002083 |
| Pfam | PF00917 | MATH domain | 20 | 130 | 9.3E-9 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 8 | 134 | 1.64E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 5 | 151 | 4.4E-34 | IPR008974 |
| SMART | SM00061 | math_3 | 8 | 111 | 2.4E-9 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 6 | 130 | 24.482061 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 178 | - | - |
| Coils | Coil | Coil | 370 | 397 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58340.2 | - | 0 |
| RefSeq | XP_013591321.1 | PREDICTED: protein RESTRICTED TEV MOVEMENT 3-like [Brassica oleracea var. oleracea] | 0 |
| Q9M2I2 | MATH domain and coiled-coil domain-containing protein At3g58340 OS=Arabidopsis thaliana OX=3702 GN=At3g58340 PE=4 SV=3 | 0 | |
| TrEMBL | A0A816YX36 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A07P24030.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |