Basic Information
Locus ID:
BniB06g054920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 53596357 | 53601142 | + | BniB06g054920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 79,325.04 Da | 53.91 | 86.79 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02854 | MIF4G domain | 36 | 133 | 1.3E-17 | IPR003890 |
| Pfam | PF02854 | MIF4G domain | 303 | 517 | 1.4E-46 | IPR003890 |
| SUPERFAMILY | SSF48371 | ARM repeat | 297 | 519 | 1.27E-62 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 28 | 141 | 1.18E-24 | IPR016024 |
| Gene3D | G3DSA:1.25.40.180 | - | 303 | 532 | 1.8E-78 | IPR016021 |
| Gene3D | G3DSA:1.25.40.180 | - | 27 | 155 | 1.6E-31 | IPR016021 |
| SMART | SM00543 | if4_15 | 303 | 517 | 2.1E-42 | IPR003890 |
| SMART | SM00543 | if4_15 | 36 | 299 | 0.15 | IPR003890 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 146 | - | - |
| Coils | Coil | Coil | 111 | 138 | - | - |
| Coils | Coil | Coil | 653 | 680 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60240.2 | eukaryotic translation initiation factor 4G. protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. | 0 |
| RefSeq | XP_018466456.1 | PREDICTED: eukaryotic translation initiation factor 4G-like [Raphanus sativus] | 0 |
| Q76E23 | Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana OX=3702 GN=EIF4G PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W786 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |