Basic Information
Locus ID:
BniB06g053940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 53189545 | 53191315 | - | BniB06g053940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 42,942.24 Da | 31.31 | 83.32 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 33 | 169 | 2.90774E-45 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 33 | 149 | 7.3E-31 | IPR001220 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 184 | 268 | 1.9E-15 | IPR001245 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 33 | 169 | 8.65E-36 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 164 | 307 | 1.93E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 266 | 356 | 9.0E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 171 | 258 | 9.2E-31 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 24 | 170 | 1.3E-30 | - |
| SMART | SM00220 | serkin_6 | 182 | 370 | 1.3E-8 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 182 | 386 | 14.987 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 188 | 211 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59700.1 | lectin-receptor kinase. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_013590724.1 | PREDICTED: L-type lectin-domain containing receptor kinase V.5-like [Brassica oleracea var. oleracea] | 0 |
| Q96285 | L-type lectin-domain containing receptor kinase V.5 OS=Arabidopsis thaliana OX=3702 GN=LECRK55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6GWS2 | Protein kinase domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC6T37797H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G59700.1, AT3G59730.1, AT3G59740.1, AT3G59750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005823m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g03460.v2.2, Sp5g03480.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064220.2N, BniB06g053940.2N, BniB06g062990.2N ... |