Basic Information
Locus ID:
BniB06g053730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 53045296 | 53050670 | + | BniB06g053730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 167,550.50 Da | 41.90 | 105.25 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 2.14213E-93 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 596 | 1.53416E-99 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1245 | 1465 | 6.22756E-124 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 929 | 1223 | 1.30218E-91 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 941 | 1175 | 1.9E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 308 | 574 | 1.2E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1264 | 1412 | 4.2E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 1.4E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 596 | 4.97E-36 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 929 | 1230 | 1.7E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 838 | 1.88E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1237 | 1477 | 1.04E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1231 | 1483 | 2.1E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 848 | 8.9E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 281 | 607 | 1.8E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 890 | 1229 | 2.4E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1273 | 1458 | 1.5E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 2.4E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1249 | 1481 | 17.740562 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 307 | 588 | 34.639706 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 931 | 1195 | 32.238235 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 622 | 845 | 22.682514 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 881 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_009104243.1 | putative ABC transporter C family member 15 isoform X1 [Brassica rapa] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8B867 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology