Basic Information
Locus ID:
BniB06g052760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 52610532 | 52611855 | + | BniB06g052760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 36,856.31 Da | 49.74 | 64.57 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 173 | 301 | 4.84502E-67 | - |
| CDD | cd16571 | RING-HC_SIAHs | 57 | 95 | 2.47026E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 101 | 300 | 1.3E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 112 | 304 | 6.28E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 98 | 1.03E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 300 | 1.6E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 166 | 3.0E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 111 | 5.8E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 95 | 9.494419 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 112 | 172 | 14.211109 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 326 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_048591649.1 | E3 ubiquitin-protein ligase SINAT3 [Brassica napus] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PKN8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_082634 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology