Basic Information
Locus ID:
BniB06g052340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 52402367 | 52403083 | + | BniB06g052340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 26,451.60 Da | 89.43 | 82.27 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 111 | 154 | 1.17253E-17 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 154 | 4.5E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 160 | 1.68E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | 7.5E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 1.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 154 | 13.536741 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 212 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_009104393.2 | RING-H2 finger protein ATL5 [Brassica rapa] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W9Q0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology