Basic Information
Locus ID:
BniB06g052230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 52345424 | 52347416 | + | BniB06g052230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 47,953.50 Da | 52.43 | 74.40 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 329 | 0.007 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 343 | 3.21E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 416 | 2.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 330 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 198 | 320.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_022544674.2 | autophagy-related protein 18a-like [Brassica napus] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W6U6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007319 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology