Basic Information
Locus ID:
BniB06g052110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 52287331 | 52294063 | + | BniB06g052110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 67,031.18 Da | 50.25 | 95.63 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 66 | 112 | 5.0E-26 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 154 | 173 | 0.22 | IPR001611 |
| Pfam | PF18511 | F-box | 8 | 47 | 2.9E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 31 | 534 | 3.53E-39 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 42 | 1.44E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 1.6E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 576 | 4.0E-187 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 480 | 504 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 96.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 155 | 192 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 395 | 2.1 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 2.6E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 431 | 454 | 79.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_013648526.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Brassica napus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B7R6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology