Basic Information
Locus ID:
BniB06g051460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
primary shoot apical meristem specification
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 51989183 | 51994552 | + | BniB06g051460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 124,392.73 Da | 42.70 | 78.84 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 906 | 939 | 0.0089 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 418 | 681 | 8.61E-39 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 349 | 443 | 7.87E-6 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 822 | 1086 | 7.33E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 515 | 2.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 965 | 1123 | 9.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 716 | 955 | 1.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 693 | 2.6E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 627 | 668 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 857 | 897 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1045 | 1085 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 900 | 939 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.038 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 818 | 854 | 94.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.1E-16 | IPR006595 |
| SMART | SM00320 | WD40_4 | 991 | 1032 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 63.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 907 | 939 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 907 | 948 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 592 | 633 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.234003 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1092 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 303 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_013648570.1 | topless-related protein 1 isoform X2 [Brassica napus] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X7W5Z4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology