Basic Information
Locus ID:
BniB06g051360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 51936368 | 51938742 | + | BniB06g051360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 38,417.76 Da | 36.39 | 67.50 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 26 | 53 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 70 | 99 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 274 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 142 | 3.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 310 | 4.07E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 343 | 3.1E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 145 | 181 | 76.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 142 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 62 | 100 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 274 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 11 | 53 | 5.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 21 | 62 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 21 | 55 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 110 | 144 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 68 | 109 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 110 | 151 | 14.41838 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 129 | 143 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 40 | 54 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 261 | 275 | 1.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_013650332.2 | protein RAE1 [Brassica napus] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W8P4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007258 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26321, jg28460 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11135, gene_21440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015866 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g190280, BVRB_9g223300 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11660, Sbi_jg25289, Sbi_jg46739, Sbi_jg9138 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19453, Seu_jg20915 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005106, GOSA_00011207 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl42966, Sgl43005, Sgl47774, Sgl47828, Sgl56005, Sgl60563 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010886, gene:ENSEOMG00000017435 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0013070, CQ.Regalona.r1.8BG0014650 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30129700 |
| Apiaceae | Apium graveolens | 2 | Ag6G02797, Ag9G00341 |
| Arecaceae | Cocos nucifera | 2 | COCNU_13G002680, scaffold017705G000040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715233, gene-LOC103717773 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.141.V1.1, AsparagusV1_03.143.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G22018, Ftri15G19742 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15850.1, AT1G80670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018796m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g075410.2N, BniB06g051360.2N, BniB06g068290.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0381, Ceq03G0090 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0401, Cgl03G0097 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0889s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g10870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-694 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.700, evm.TU.LG08.1140 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002079 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16955 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2452, AH08.471, BH02.2562, BH08.491, CH02.2744 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0076300, gene-QOZ80_8AG0619210 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0005400.1, HORVU.MOREX.r3.3HG0274320.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032839, gene-QYE76_032871 |
| Poaceae | Oryza coarctata | 3 | Oco02G015670, Oco15G003220, Oco16G003210 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g44394.1, LOC_Os08g07960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G205800, gene-BS78_07G063000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402412, Pt_Chr0600883 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G019110, Chr08G012000, Chr16G002060, Chr17G001890 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G071800, Tel3E01G391800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG003480, gene_TRIDC1BG004350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G033000.1, TraesCS1B02G041300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb158970_P001, Zm00001eb412490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48501, nbis-gene-50591 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22557, Zma_g23696 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2623, evm.TU.LG08.210, evm.TU.LG08.985 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g29140, gene.Posoc06g05560, gene.Posoc08g05760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28271, nbisL1-mrna-28310 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6176 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7768 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.242 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018771 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13322, nbisL1-mrna-23426 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17211 |
| Salicaceae | Populus euphratica | 2 | populus_peu04080, populus_peu34912 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606407, gene-LOC132619678 |
| Solanaceae | Solanum chilense | 1 | SOLCI003047700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031940 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10972, gene_6920 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0145, TC08G2303 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26500.v3.1 |