Basic Information
Locus ID:
BniB06g051180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 51862889 | 51864641 | - | BniB06g051180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 51,688.44 Da | 41.99 | 99.36 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 53 | 6.9E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 66 | 9.29E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 146 | 260 | 3.77E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 252 | 1.4E-5 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 52 | 1.8E-8 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 3.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 10.557245 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.6 | - | 0 |
| RefSeq | XP_018446858.1 | PREDICTED: F-box protein At1g80960 [Raphanus sativus] | 0 |
| Q9SAG4 | F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7W5X5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007241 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... |
| Brassicaceae | Brassica nigra | 25 | BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28740 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3233_chr01_+ |