Basic Information
Locus ID:
BniB06g051030.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 51797432 | 51800048 | - | BniB06g051030.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 38,846.59 Da | 50.48 | 75.66 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.22651E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.6E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 152 | 186 | 1.5E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 237 | 292 | 2.7E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 320 | 355 | 1.8E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 299 | 361 | 1.98E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 1.29E-19 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 199 | 3.83E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 233 | 301 | 1.29E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 311 | 359 | 5.5E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 141 | 191 | 5.1E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 226 | 292 | 8.9E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.6E-25 | - |
| SMART | SM00727 | CBM | 235 | 278 | 9.9E-8 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.1E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 320 | 357 | 7.1E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 148 | 188 | 0.019 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 362 | 4.3E-118 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.582844 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 189 | 11.631204 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 318 | 358 | 15.992779 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 330 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 263 | 285 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 331 | 345 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 361 | 2.9E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 144 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013648605.2 | ubiquitin receptor RAD23b [Brassica napus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A397YXN8 | Ubiquitin receptor RAD23 OS=Brassica campestris OX=3711 GN=BRARA_G02068 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology