Basic Information
Locus ID:
BniB06g050620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA repair protein recA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 51562775 | 51565633 | - | BniB06g050620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 45,674.50 Da | 39.91 | 89.43 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 64 | 384 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 67 | 329 | 3.5E-118 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 329 | 384 | 1.57E-17 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 65 | 328 | 3.43E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 94 | 386 | 2.6E-104 | IPR027417 |
| SMART | SM00382 | AAA_5 | 116 | 287 | 1.3E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 64 | 384 | 5.1E-144 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 258 | 333 | 28.719727 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 95 | 253 | 28.562178 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 272 | 280 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 358 | 375 | 2.4E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 152 | 181 | 2.4E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 224 | 253 | 2.4E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 186 | 215 | 2.4E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 269 | 297 | 2.4E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 304 | 333 | 2.4E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 65 | 390 | 45.097618 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 421 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_018466896.1 | PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like [Raphanus sativus] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W7J7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007195 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology