Basic Information
Locus ID:
BniB06g049620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
HPC2 and ubinuclein domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 50957354 | 50961084 | + | BniB06g049620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 73,596.75 Da | 48.11 | 65.97 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08729 | HPC2 and ubinuclein domain | 115 | 163 | 1.8E-13 | IPR014840 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 86 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77310.1 | 0 | |
| RefSeq | XP_013592637.1 | PREDICTED: ubinuclein-1-like isoform X4 [Brassica oleracea var. oleracea] | 0 |
| F4I700 | Ubinuclein-2 OS=Arabidopsis thaliana OX=3702 GN=UBN2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7PI55 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_082950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12057, jg23142 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22960, gene_4202 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024127 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g010120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2689, Sbi_jg28342 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7133 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020174 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11671, Sgl17171 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014315, gene:ENSEOMG00000016062 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012900, CQ.Regalona.r1.1BG0013070 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30039160, pistato.v30201780 |
| Apiaceae | Apium graveolens | 2 | Ag3G01843, Ag4G01296 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G020320, scaffold036470G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702606, gene-LOC103718710 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2938.V1.1, AsparagusV1_10.891.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G13038 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21610.3, AT1G77310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19140.v2.2, Sp5g32490.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g056450.2N, BniB05g073570.2N, BniB06g049620.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1873 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2013 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g08860, gene.Cymno08g04010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g09780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12297, nbisL1-mrna-5254 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.904, evm.TU.LG06.832 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021690 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38293, Lb4G21569, Lb6G30847 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4098, BH02.4110, CH02.4141 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0092040 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065090.2, HORVU.MOREX.r3.3HG0307140.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013165, gene-QYE76_056935, gene-QYE76_056969 |
| Poaceae | Oryza coarctata | 3 | Oco01G026670, Oco02G027680, Oco10G010100 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66050.1, LOC_Os05g34900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G359100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505049, Pt_Chr0600079 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G021440, Chr05G030280, Chr08G020720 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G435200, Tel3E01G646000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG039450, gene_TRIDC1BG044900 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G264100.1, TraesCS1B02G274800.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145640_P001, Zm00001eb366130_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11176, nbis-gene-28547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11676, Zma_g9139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1544, evm.TU.LG08.1214, evm.TU.LG10.1376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11270 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1144, evm.TU.Scaffold_8_RagTag.607 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18704, nbisL1-mrna-9643 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2485, nbisL1-mrna-5555 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13130, nbisL1-mrna-18164 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.407, evm.TU.utg000018l.611 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003638 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2897, nbisL1-mrna-8893 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20430, nbisL1-mrna-24343 |
| Salicaceae | Populus euphratica | 6 | populus_peu13696, populus_peu14778, populus_peu22857 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627158 |
| Solanaceae | Solanum chilense | 1 | SOLCI001590800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003842, gene-LOC107005094 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.25073_chr11_-, gene_15726 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2541, TC09G1993 |
| Zosteraceae | Zostera marina | 3 | Zosma02g06870.v3.1, Zosma04g16010.v3.1, Zosma05g16340.v3.1 |