Basic Information
Locus ID:
BniB06g049360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 50767236 | 50768345 | + | BniB06g049360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 41,820.79 Da | 54.64 | 87.42 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 46 | 4.2E-9 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 71 | 319 | 1.57E-10 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 88 | 1.02E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 46 | 4.6E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 64 | 346 | 5.4E-7 | IPR015915 |
| SMART | SM00256 | fbox_2 | 9 | 49 | 4.8E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 48 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76920.1 | F-box family protein. | 0 |
| RefSeq | XP_009104648.2 | SKP1-interacting partner 15 [Brassica rapa] | 0 |
| O49279 | SKP1-interacting partner 15 OS=Arabidopsis thaliana OX=3702 GN=SKIP15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W772 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_007084 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11983, jg23073, jg6394 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22876 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028920 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26982, Sbi_jg33567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8276 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73279, Sgl76800 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000036283, gene:ENSEOMG00000038314 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0000610, CQ.Regalona.r1.9BG0005190 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30038020 |
| Apiaceae | Apium graveolens | 1 | Ag4G02449 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G018810, COCNU_11G000400 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704347, gene-LOC103710148, gene-LOC120105092 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.148.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G17926 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G76920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019824m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0346_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g056000.2N, BniB05g073340.2N, BniB06g049360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1960 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2107 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01060 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g18820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.723 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036896 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35770 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2789, BH09.3022, CH09.3188 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298600, gene-QOZ80_4BG0329300 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0214830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_011104, gene-QYE76_047665 |
| Poaceae | Oryza coarctata | 2 | Oco07G019850, Oco08G019130 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G292400 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G000360, Chr25G000300, Chr26G018830, Chr30G000040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G996200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG080120, gene_TRIDC2BG088240 |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G577100.1.cds1, TraesCS2B02G610300.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb076050_P002, Zm00001eb080980_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23253, nbis-gene-6254 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20731, Zma_g22279 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.687, evm.TU.LG26.340 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1216 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18617 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10445, nbisL1-mrna-1085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.141 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011756 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20299 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18420, nbisL1-mrna-18634 |
| Salicaceae | Populus euphratica | 2 | populus_peu14866, populus_peu32540 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627295 |
| Solanaceae | Solanum chilense | 1 | SOLCI003896400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015727 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8630 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2857 |
| Zosteraceae | Zostera marina | 2 | Zosma04g23930.v3.1, Zosma05g29230.v3.1 |