Basic Information
Locus ID:
BniB06g048050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 49986060 | 49988109 | - | BniB06g048050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 44,286.87 Da | 30.38 | 78.99 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 97 | 366 | 9.65284E-99 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 96 | 302 | 3.0E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 68 | 368 | 1.46E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 61 | 170 | 6.2E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 171 | 389 | 4.4E-56 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 91 | 387 | 36.569618 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 97 | 124 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 214 | 226 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 36 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74490.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013588757.1 | PREDICTED: protein kinase 2B, chloroplastic [Brassica oleracea var. oleracea] | 0 |
| O49840 | Probable serine/threonine-protein kinase PBL3 OS=Arabidopsis thaliana OX=3702 GN=PBL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W6K4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006954 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74490.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019838m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g048050.2N |