Basic Information
Locus ID:
BniB06g047950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
pentatricopeptide repeat-containing protein At1g74400
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 49918790 | 49921207 | + | BniB06g047950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 59,266.06 Da | 47.55 | 88.70 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 312 | 336 | 0.015 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 133 | 180 | 3.0E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 235 | 283 | 3.2E-7 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 209 | 438 | 1.1E-39 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 29 | 207 | 3.1E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 210 | 236 | 2.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 135 | 169 | 2.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 239 | 272 | 1.5E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 205 | 235 | 8.95544 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 133 | 167 | 10.084454 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 236 | 270 | 9.996763 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_048591747.1 | putative pentatricopeptide repeat-containing protein At1g74400 [Brassica napus] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A816Z2H2 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A07P29440.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |