Basic Information
Locus ID:
BniB06g047380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 49611309 | 49612496 | - | BniB06g047380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 43,452.68 Da | 40.26 | 104.20 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 66 | 1.7E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 146 | 168 | 0.016 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 214 | 228 | 1.9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 367 | 1.59E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 190 | 1.5E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 261 | 1.4E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 263 | 368 | 1.1E-11 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 147 | 160 | 6.5E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 237 | 250 | 6.5E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_018438622.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0JSF4 | LRR receptor-like serine/threonine-protein kinase ERL1 OS=Raphanus sativus OX=3726 GN=LOC108811022 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology