Basic Information
Locus ID:
BniB06g046700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 49343082 | 49348458 | + | BniB06g046700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 168,429.59 Da | 42.23 | 106.24 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 6.88843E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 597 | 1.1001E-104 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 1.95907E-126 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 623 | 823 | 1.27956E-103 | - |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 6.5E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 953 | 1194 | 1.7E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 313 | 577 | 8.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 641 | 775 | 4.1E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1259 | 1499 | 1.11E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 945 | 1251 | 1.44E-49 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 299 | 605 | 1.83E-40 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 845 | 5.11E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 621 | 853 | 1.5E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 275 | 606 | 2.3E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1252 | 1504 | 1.2E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1246 | 3.5E-58 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1295 | 1480 | 2.5E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 650 | 823 | 6.1E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 589 | 37.301666 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 623 | 846 | 23.249405 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1222 | 36.035336 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1503 | 17.65386 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 748 | 762 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 920 | - | - |
| Coils | Coil | Coil | 470 | 490 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_018493556.1 | PREDICTED: ABC transporter C family member 5 [Raphanus sativus] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7QBZ0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_061937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology