Basic Information
Locus ID:
BniB06g046660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
AT1G04210 (E 0.0) leucine-rich repeat family protein protein kinase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 49302884 | 49307661 | - | BniB06g046660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 126,183.95 Da | 48.65 | 88.13 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 832 | 1067 | 4.3E-34 | IPR000719 |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 652 | 739 | 2.2E-12 | - |
| Pfam | PF13855 | Leucine rich repeat | 220 | 278 | 1.3E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 80 | 284 | 1.87E-30 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 828 | 1117 | 2.87E-48 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 331 | 9.6E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 800 | 1089 | 2.2E-44 | - |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 6.6E-4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 121 | 210.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 241 | 262 | 0.12 | - |
| SMART | SM00220 | serkin_6 | 788 | 1115 | 8.0E-28 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 195 | 220 | 2.3 | - |
| SMART | SM00364 | LRR_bac_2 | 218 | 237 | 14.0 | - |
| SMART | SM00364 | LRR_bac_2 | 241 | 260 | 6.8 | - |
| SMART | SM00364 | LRR_bac_2 | 195 | 214 | 23.0 | - |
| SMART | SM00369 | LRR_typ_2 | 241 | 264 | 0.74 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 197 | 218 | 9.175088 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 243 | 264 | 8.63604 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 779 | 1111 | 30.859482 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 928 | 940 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 3.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 198 | 211 | 3.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 448 | - | - |
| Coils | Coil | Coil | 1052 | 1072 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04210.1 | Leucine-rich repeat protein kinase family protein. Encodes a putative Raf-related kinase. | 0 |
| RefSeq | XP_013696313.2 | uncharacterized protein LOC106400505 [Brassica napus] | 0 |
| Q54XL6 | Serine/threonine-protein kinase fray1 OS=Dictyostelium discoideum OX=44689 GN=fray1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A078FYV5 | BnaC05g02340D protein OS=Brassica napus OX=3708 GN=BnaC05g02340D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12609 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020547 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51631, Sbi_jg5590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13333 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016981 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03476, Sgl08586 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014794, gene:ENSEOMG00000029920 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015630, CQ.Regalona.r1.3BG0016210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30236070 |
| Apiaceae | Apium graveolens | 1 | Ag5G02535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697568 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1929.V1.1, AsparagusV1_08.1931.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G21735 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000396m.g.v1.0, Thhalv10006614m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g001590.2N, BniB06g046660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0352 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1874, Cgl07G0357 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20830 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.951 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00000180, Pov_00000182, Pov_00010287, Pov_00010290 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07972 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.782, CH01.777, Contig309.119 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216650, gene-QOZ80_3BG0261920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0509880.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G023290, Oco06G024180 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G084600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107116 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005540, Chr04G028400, Chr07G027350, Chr12G037890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G610200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056000, gene_TRIDC5BG060020 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G383000.2, TraesCS5B02G387500.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb004230_P001, Zm00001eb056920_P002 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15037, nbis-gene-16117 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2820, Zma_g498 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2033, evm.TU.LG14.332 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-669 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.488 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007613 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3519 |
| Salicaceae | Populus euphratica | 2 | populus_peu07438, populus_peu21450 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132612355 |
| Solanaceae | Solanum chilense | 1 | SOLCI000277700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031048 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6304_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1982 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17910.v3.1 |