Basic Information
Locus ID:
BniB06g045880.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 48793226 | 48795652 | + | BniB06g045880.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 46,635.04 Da | 55.18 | 69.76 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 254 | 318 | 1.30409E-21 | - |
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 7.57503E-47 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 8.0E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 254 | 321 | 4.0E-15 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 251 | 324 | 2.23E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 32 | 133 | 3.79E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 238 | 333 | 5.7E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 132 | 1.7E-24 | IPR036431 |
| SMART | SM00398 | hmgende2 | 253 | 322 | 1.4E-19 | IPR009071 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 1.9E-27 | - |
| SMART | SM00501 | bright_3 | 35 | 126 | 1.3E-25 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 254 | 321 | 15.541178 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 24.849669 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 248 | - | - |
| Coils | Coil | Coil | 303 | 330 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_013665619.2 | high mobility group B protein 15 [Brassica napus] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W6V9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006895 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology