Basic Information
Locus ID:
BniB06g045570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 48673466 | 48677576 | + | BniB06g045570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 97,887.85 Da | 52.47 | 82.36 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 167 | 453 | 1.99321E-81 | - |
| CDD | cd18793 | SF2_C_SNF | 690 | 817 | 2.07035E-55 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 692 | 806 | 1.2E-12 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 608 | 647 | 3.2E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 180 | 441 | 3.3E-49 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 382 | 861 | 5.14E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 600 | 652 | 4.04E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 511 | 3.55E-46 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 602 | 675 | 1.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 136 | 294 | 3.8E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 316 | 529 | 4.5E-25 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 533 | 862 | 1.0E-64 | IPR027417 |
| SMART | SM00487 | ultradead3 | 163 | 443 | 1.1E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 723 | 806 | 5.7E-16 | IPR001650 |
| SMART | SM00184 | ring_2 | 608 | 647 | 1.6E-5 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 179 | 438 | 15.941397 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 608 | 648 | 12.017182 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 688 | 852 | 13.780396 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 623 | 632 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 60 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05120.1 | Helicase protein with RING/U-box domain. | 0 |
| RefSeq | XP_013637808.1 | PREDICTED: DNA repair protein RAD16 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| P79051 | ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp16 PE=3 SV=2 | 0 | |
| TrEMBL | A0A078FZ14 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaC05g03140D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18987, jg18989 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14750, gene_25783 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037464 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208500 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg29553, Sbi_jg41818, Sbi_jg48299 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15841, Seu_jg27638 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028477 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl79171, Sgl81626 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000037857, gene:ENSEOMG00000052877 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0006380, CQ.Regalona.r1.9BG0016040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018310 |
| Apiaceae | Apium graveolens | 1 | Ag11G03296 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012040, contig69363763G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717783 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1174.V1.1, AsparagusV1_03.1175.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G27109, Ftri7G21753 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G02670.1, AT1G05120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006803m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03980.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g001220.2N, BniB06g045550.2N, BniB06g045570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2401 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2476 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g00500 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0215s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g18950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004420 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28281 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3136, BH03.3321, CH03.3511 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568870, gene-QOZ80_7BG0600540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0141740.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041052 |
| Poaceae | Oryza coarctata | 2 | Oco13G008410, Oco14G008870 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G291200, gene-BS78_03G027200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304165 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr08G018520, Chr28G007680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G417600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG009870, gene_TRIDC2AG030000 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G074500.2, TraesCS2A02G224300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb046950_P001, Zm00001eb092190_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-910 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6505 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.374, evm.TU.LG21.76 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g13000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60414.8, evm.TU.Scaffold_9_RagTag.1591 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20411, nbisL1-mrna-20488 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8822 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21352 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.844 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1214 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4715 |
| Salicaceae | Populus euphratica | 1 | populus_peu27014 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132617992, gene-LOC132618790, gene-LOC132618966 ... |
| Solanaceae | Solanum chilense | 8 | SOLCI000188200, SOLCI001125800, SOLCI001356700 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107001711, gene-LOC107006318, gene-LOC107018510 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13800 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2324 |